PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.WS4W4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 149aa    MW: 17083 Da    PI: 10.0369
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.WS4W4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.62.9e-102859432
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC..... CS
          HLH  4 ahnerErrRRdriNsafeeLrellPkas...k 32
                  hn  ErrRRdriN+++  L++l+P++     
  Aradu.WS4W4 28 VHNLSERRRRDRINEKMRALQDLIPNCNkvrL 59
                 6*************************844550 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-122190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-102373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.6962481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-62758No hitNo description
PfamPF000101.0E-72865IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MMDIEEESVG VKKACPTRGV KRSRSAEVHN LSERRRRDRI NEKMRALQDL IPNCNKVRLF  60
ILSNLEPYLL LLEPKMQPEK QRNETKRQEA WQVYGALLCA VGQCMHEKAK IFNNLLSPPT  120
RASSRSKAMI AMSSMTSVCC NEIYTGVLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13237ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311325e-37KT031132.1 Glycine max clone HN_WYQ_58 bHLH transcription factor (Glyma20g22291.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015965549.18e-95PREDICTED: transcription factor PIF3-like isoform X1
RefseqXP_015965550.18e-95PREDICTED: transcription factor PIF3-like isoform X1
TrEMBLA0A0B2NR204e-32A0A0B2NR20_GLYSO; Transcription initiation factor TFIID subunit 6
STRINGGLYMA08G43490.11e-31(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.27e-23phytochrome interacting factor 3